The gauge cluster is new (and nice)
the driver's side left air dam ram air stuff is new. I like mark's cold
air setup, but a lot also run these kinds of ramair systems.
the upper plenum and throttle body are new. look like hemco?
the fuel pressure regulator looks stock. buy an adjustable one.
up-pipe from intercooler to throttle body is new. very 'minor' kind of upgrade though really.
those headers don't look stock. maybe it's hard for me to recognize them without the heatshields there though. compare them to
this and see which they look like. that might help for the exhaust too.
#8 the powermaster system (weird buick hydraulic brake booster system) looks like it's been replaced recently. this is good, they're prone to failure
in #16 it looks like the heater hose to the throttle body is still intact. most people loop that back for performance (sacrifices some cold start capability)
downpipe looks stock to me in the picture.
in #18 you might want to replace that wastegate actuator with an adjustable one. or cut the thing and add a threaded coupler yourself, thread the ends, and have a homemade adjustable actuator.
#18 looks like stock intercooler with stock neck. That bend right after the turbo is a well-known restriction. A new intercooler would help, or chop off the current neck and weld on a duttweiler neck.
#20 if the ecm was already out so that you could take the cover off to look at the chip, probably the chip has already been swapped before. I haven't seen enough to recognize them all. Wish someone would make a chip photo database (maybe I'll get on that

)
as for the turbo, my guess is a cheetah. Don't know who else has an exhaust housing w/ that external gate provision in that fashion. compare
these
#9 looks like you were thinking of removing the MAF screens. don't remove both screens, runs best with 2 or 1.
the valve covers of course are new, not like it's a performance mod though. I don't think the cheetah has the little inlet for the hose going from the passenger side valve cover, so hopefully you don't have it. pretty sure you don't. anyway it sucks up oil from the valve cover and spits it into the intercooler.
and regardless of parts on the car,
spring cleaning
is always a good idea
HTH