Did you check your door pins to make sure they aren't worn. Door sag is the biggest problem on old GM cars. Especially driver's side.
As for hanging the doors, wrap the corners., and the leading edge of the fender and door with some sort of padding like closed cell foam wrap or something. Install the door at about a 45degree open angle.
I find that you need 2-3 people to hang a door.
A couple of methods.
Method 1 - put the door on a floor jack. Put a nice wide 2x4 on the jacking pad. Have two people guide the door while one person attaches the hinges.
The other method is to use an engine hoist, and two folks to guide the door.
The final method is to have 2 or 3 guys and wrestle the thing up there by yourself with no jacks or anything else. You don't want to do that, as these suckers are heavy.
Also, make sure your springs are compressed ahead of time. Compress them, and wire them down so that you can install them, and once the door is in place you can cut the wire and let the spring expand.
For fenders make sure the car is on the ground and sitting level, as the front end will droop with no fenders on it.
Did you mark the trunk and the hood before you removed them? Always mark around the hinges where they attach, it allows you to put it back right where it came off. I outline with a sharpie which you can see when you re-install the piece.
Did you save and mark the fender washers that were on the car to begin with?
If you didn't hanging and aligning the panels may be a bit out of your league. You may wish to consult with your local body shop on installing and aligning your panels.
Good luck.