With that said Azgn, which is the proper way? Tuning with key on (car off) or the other method, car running? I just discovered this also the other day, however, I forgot about until I cam across this post.
well, it really doesn't matter as long as you are close...and trust me, it would be hell to set the WOT tps with the car running....so just keep setting it with the motor off
as regards the 02........you should be getting a lot of action in the 02 cross counts section of your scan tool if the sensor is good...other than a code, it is difficult to say when they die, but generally low cross counts, crappy running, and bad fuel economy is a clue