Steve, not sure if you are just giving general info about the side clearances for the rods, but the 3.8L even-fire crank that is used in our motors have 1 rod per journal, not 2...The older odd-fire 3.8L's have 2 rods per journal like a V8 motor...
But that really isn't the point of the whole thing...I'm with the other's on this one, I think you(87Regal) need to get with the Chicagoland chapter or someone in the area who knows more about these motors and get your motor to another shop...Something definately isn't right, and these motors aren't a typical Chevy/Ford motor...They are a different breed and need certain things done more carefully in certain areas to get a good final product when rebuilt...