Well, it seemed to be running better until I started to open it up and saw KR come up. I think next step is verify fuel pressure rising with boost (and hope I don't see white smoke, not sure how bad is new headgasket bad with knock).
Also, I found a small, crack in the body of the fuel pressure regulator. I don't know what the internal structure of these things look like, but is it safe to assume that's no good? I can pull it off later and get a picture. Anyhow, here's the log. Thanks again for all feedback!
EDIT: Didn't see it go over 15psi, smooth climb. Still need to wire that in...
EDIT 2: Not enough fuel in the tank? I was going uphill where the KR comes in.