I'll give you my experiencce with intake missmatch. First year i ran TSE at BG you had to run stock intake with no welding allowed. I ran an on center stage II with stock intake port matched as close as possible. Combo was 3.875 bore 3.40" stroke GN 1 small valve heads, stock intake 62mm throttle body,V2 intercooler, 76HPQ 3600 pounds, best et 9.27 .
Next year the Champion intake was allowed. New combo 3.900" bore 3.625 " stroke, ported Champion race intake, 70 mm TB , Big valve TA heads V1 intercooler, same turbo, cam , and weight. Best et with 20 more cubic inches, bigger intercooler, better heads, and perfectly port matched intake 9.27.