the cars are over 10 years old, stuff rattles unless you freshen things up...
- replace worn weather stripping
- you can put dynamat on the back of the license plate and make sure its secured toghtly to the brakcet
- fill in the webbing of the trunk lid with DAP expanding foam
- "upholster" the trunk sheetmetal with Dynamat/brownbread/rammat or similar sound deadener
- secure your sub enclosure to the car
Unless you have a hatch-back, I'd say that 90% of sub installs are done in the trunk. Majority of which are pointed towards the back of the trunk to compensate for the long wave-length of the sub frequencies, by pointing the subs to the rear the wave length travels a longer distance before reaching your ears inside the car, this allows for the Bass Up Front illusion.
Read some of this stuff, or all :
http://www.audiocontrol.com/techpapr.htm
Eddie has his subs ported into the passenger compartment via the rear deck trim surface being augmented with ports.
Putting a enclosure into the footwells of a car, unless for some sort of show-statement, isn't really going to provide optimum sound reproduction and it also isn't practical since it eliminates the foot-space for back seat passengers.. and if you just stick a box in there, its not very asthetically pleasing either.. even if its matching color to the stock interior.. its just not done for a reason.
Read some articles on carsound.com and termpro.com and check out rides at sounddomain.com for other ideas.
A lot of SUV owners in particular like building a custom center console in-which they house a 10" or 12" sub. Gary Biggs put in a sub right behind the glove box of his competition Regal. So, having the sub inside the passenger compartment or venting into the compartment can be done, just a matter of working around what your given in terms of space contraints, asthetical appeal, practicality and well, money.
Overall, if you just want to throw time, money and speakers at the car, do whatever .. but even with the most fancy of professional installations, there is some function and physics to the layout.