With t-body leading edge lip being so thin, it looks like someone has ported the t-body, then dropped it on concrete and it cracked.
As long as it doesn't leak, you should be good. But that is something I would address in the future, as my OCD would get the best of me knowing it was like that.
Plug gaps on .032 should be fine for boost levels under 22, especially since you just swapped out the coil pack and ignition module. Resealing the turbo is not an easy DIY project. It's typically a full blown turbo rebuild by a reputable shop. If it's not showing signs of oil dripping out of the compressor cover discharge, and it has no excessive shaft play, it's probably good.
Does the car still have the stock PCV valve? If it has the stock PCV, it could be sucking in oil and coating your intake and fouling the plugs. Kirban and others still sell the PCV check valve which replaces the stock style PCV and functions the same.
You said it has valve cover breathers, and if by that, do you mean it has both? If so you can rule out the turbo sucking oil out of the stock passengers side valve cover to turbo breather tube.