I think that the door(s) that open and close to redirect air from the floor to the dash vents to the defroster vents are vacuum controlled...Either that, or there is a cable or plastic part under the dash that is broken or misadjusted...I know that if you search the gnttype archives or post in the general tech section here on the BB, that someone will know how to fix it...I've seen it discussed on the gnttype list before, but have never needed to do it...
Yes, I think that the circuit board does control the fan speeds...there is a resistor on that board that goes bad and causes all kinds of problems with the digital climate control dash...The etcc is excellent when it works right, but a PITA when it doesn't...
As I've mentioned before, Jim Testa knows a lot about AC and the related systems on these cars...He'll be able to answer your questions alot better...