I/m running a 7/8" Wilwood master cylinder and have been fighting a similar issue. I am running manual brakes also. I have replaced all calipers with stock which didn't help so I forked out $$$$ for the Wilwood big brake kit for the front and a rear disk conversion for the back. It is better but still not what I would like with a turbo ls motor moving the car. I called Wilwood tech support and they suggested a 2lb residual valve for the back which came in this week and hopefully will be installed over the weekend. I'm about to burn this thing if I can't get it working right!!! BTW, what bracket is that you are using to mount your master cylinder?