in a nutshell
mill the top of the caps (to approx 2" tall) and shave them slightly for line hone
install the caps and some shims and then the girdle and shoot for .005 clearance around the pan rail of the block
adjust shims as needed and be aware to get the clearance may require shaving the pan rail if they seem to be uneven
reinstall the girdle with all the hardware and torque it down
now do the line hone
take it all apart and clean
install bearings , caps, shims and girdle , torque again and measure each of your mains , then measure the crank and see if its good to go
if clearances are good take it all apart ,
install the block half of the rear main seal , the crank , the caps( this time with the rear main seal inplace ), and then fill the rear main cap grooves with right stuff
clean the pan rail surfaces , install the shims as you had them only this time put a good bead of right stuff on the rail
torque it all down , then fill the pan stud holes with rtv and install the rail nuts and the top washers
install the pickup extension and your tube and check the pan clearance, if that checks
you can finsish up the front (cam timing set , oil pump) and once thats set install the front cover with rtv on the bottom
install the oilpan with a cork gasket , and use rtv or locktite on the pan rail nuts (a nylon lock nut would be better for this) or they will fall off before you get back to retorque the cork gasket