Where are your ref pulses (crank sensor) occurring? If you have a BHJ damper for example your ref pulses may be at 5-6 deg BTDC (like mine are), not where the stockers are. The cam sensor signal needs a certain amount of "setup" time and "hold" time to properly mark the crank pulse. So, say if you have it perfectly set in terms of absolute crank degrees, like when using the popular 25 deg of tape method, but also have a BHJ damper with the crank pulses at 5-6 deg BTDC then the actual resulting setting relative to the crank pulse will already be off by the same amount that the BHJ damper is compared to the stock damper. It will likely still work, but at some point you could get it far enough out that it would cause it to lose proper sync. The stock coil module needs both the cam and crank signals (in the proper sequence) to be able to get into sync with the waste spark firing order. Just something to consider.
TurboTR