Looking at my math:
110 mph with a 3.25 gear left in third should net you 4620 rpms give or take.
110X336=36960X3.25=120,120/26=4620 rpms
110mph with a 3.55 gear left in third should net you 5046 rpms give or take.
110X336=36960X3.55=131,208/26=5046 rpms
Now if you are on a smaller tire(some street radials actually measure close to 25.1")
110X336=36960X3.55=131,208/25.1=5227 rpms
I have seen stock tacjs off as much as 200-300 rpms, but that's the max I've seen. With you stated setup your tach would have to be off 600 rpms, not impossible considering what we are dealing with. Is there any chance that the gears you thought were 3.25 were actually 3.55? If the VSS is off it could throw off the tach and scanmaster alike. I believe the VSS for our cars are 17 for the driven and 43 for the drive gears. Grey and Red seem to stand out in my head. I had worked quite a while on these when I swapped from an auto to a T-5 in my last Firebird. If you are sure that the gears are correct I'd look into the vss indicating a bad tach reading which in turn would theoretically make you shift early possibly losing some good mph and consequently ET's.
HTH
Pete